Library size by sample:
## X1.1 X1.2 X1.3 X1.4 X1.7 X1.8 X2.1 X2.2 X3.1 X3.2 X4.1
## 124854 91548 118181 122073 108614 92391 83343 50051 98748 102995 118116
## X6.2 c.1 c.3
## 85766 102640 128282
Summarized library size:
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 50051 91759 102818 101972 118165 128282
Species level (not normalized):
Species level (rarefied to the lower sample):
Genus level (not normalized):
Genus level (rarefied to the lower sample):
PCoA - Bray Curtis - Species level:
PCoA - Bray Curtis - Genus level:
UV-resistant and/or pigment-producing bacteria have been extensively described in the literature. So, we can know beforehand which taxa to search in this dataset. As the resolution of ONT 16S rRNA sequencing do not reach the species level (even using the entire 16S), we will search at the genus and family level.
Note: Rufibacter and Microvirga are NOT in GreenGenes 13_8, but they are included in Silva 138.
(We finally use Silva 138).
Not grouped:
Grouped:
Richness of UV-bacteria (Presence/Absence):
samples has been sorted by total richness (presence of UV-resisstant bacteria)
Abundance + richness of UV-bacteria (all together):
Note: Samples are sorted by the total number of UV-resistant bacteria found (UV Bacteria) Note 2: Rarefaction to the lower library size has been performed in order to calculate richness
OTU-like tables have been written for Species, Genera & Phylum Level.